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Dormann [aut, cre]\n(), Jochen Fruend [aut]\n(), Bernd Gruber [aut]\n(), Tobias Bauer [ctb]\n(), Stephen Beckett\n[ctb] (), Mariano Devoto\n[ctb] (), Gabriel M.F.\nFelix [ctb] (), Jose M.\nIriondo [ctb] (), Tore\nOpsahl [ctb] (), Rafael\nB.P. Pinheiro [ctb] (),\nRouven Strauss [ctb], Diego P. Vazquez [ctb]\n()", "Maintainer": "Carsten F. Dormann ", "LazyData": "TRUE", "ByteCompile": "TRUE", "Encoding": "UTF-8", "NeedsCompilation": "yes", "VignetteBuilder": "knitr, utils", "URL": "https://github.com/biometry/bipartite", "Description": "Functions to visualise webs and calculate a series of\nindices commonly used to describe pattern in (ecological) webs.\nIt focuses on webs consisting of only two levels (bipartite),\ne.g. pollination webs or predator-prey-webs. 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gayi", "Allograpta.Toxomerus", "Trichophthalma jaffueli", "Platycheirus1", "Heterosarus", "Sapromyza.Minettia", "Nitidulidae", "Staphilinidae", "Chalepogenus caeruleus", "Phoridae2", "Unknown1", "Cantharidae", "Coleoptera8", "Curculionidae3", "Coleoptera7", "Coleoptera6", "Phoridae3", "Tachinidae", "Diptera9", "Diapriidae" ], "rows": 8, "table": true, "tojson": true }, { "name": "vazmasnc", "title": "A pollination network.", "object": "vazmasnc", "class": [ "matrix", "array" ], "fields": [ "Policana albopilosa", "Bombus dahlbomii", "Ruizantheda mutabilis", "Trichophthalma amoena", "Bombus ruderatus", "Colletes seminitidus", "Syrphus octomaculatus", "Manuelia gayi", "Allograpta.Toxomerus", "Trichophthalma jaffueli", "Anthaxia", "Caenohalictus1", "Phthiria", "Platycheirus1", "Sapromyza.Minettia", "Nitidulidae", "Staphilinidae", "Vespula germanica", "Ocyptamus melanorrhinus", "Coleoptera9", "Ruizantheda nigrocaerulea", "Thomisidae", "Salpingidae", "Hesperiidae", "Melyridae2", "Curculionidae1", "Braconidae2", "Melyridae1", "Diptera11", "Chilicola3", "Tinnidae", "Asilidae", "Tabanidae", "Heteroptera", "Hymenoptera3" ], "rows": 8, "table": true, "tojson": true }, { "name": "vazquec", "title": "A pollination network.", "object": "vazquec", "class": [ "matrix", "array" ], "fields": [ "Bombus dahlbomii", "Ruizantheda mutabilis", "Trichophthalma amoena", "Bombus ruderatus", "Colletes seminitidus", "Syrphus octomaculatus", "Manuelia gayi", "Allograpta.Toxomerus", "Trichophthalma jaffueli", "Caenohalictus1", "Phthiria", "Platycheirus1", "Heterosarus", "Chalepogenus caeruleus", "Vespula germanica", "Ocyptamus melanorrhinus", "Ruizantheda nigrocaerulea", "Evylaeus", "Thomisidae", "Corynura prothysteres", "Salpingidae", "Mordellidae", "Platycherius fenestratus", "Acroceridae", "Bombilidae", "Allograpta exotica", "Diptera2" ], "rows": 8, "table": true, "tojson": true }, { "name": "vazquenc", "title": "A pollination network.", "object": "vazquenc", "class": [ "matrix", 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"barrett1987", "title": "Individuals caught in a pollination web in boreal Canada.", "topics": [ "barrett1987" ] }, { "page": "betalinkr", "title": "Calculate network dissimilarity (beta diversity) and its components", "topics": [ "betalinkr", "betalinkr_multi" ] }, { "page": "betweenness_w", "title": "Betweenness centrality in a weighted network", "topics": [ "betweenness_w" ] }, { "page": "bezerra2009", "title": "Individuals observed in a flower-visitation network of oil-collecting bees in a Brazilian steppe.", "topics": [ "bezerra2009" ] }, { "page": "C.score", "title": "Calculates the (normalised) mean number of checkerboard combinations (C-score) in a matrix", "topics": [ "C.score" ] }, { "page": "closeness_w", "title": "Closeness centrality in a weighted network", "topics": [ "closeness_w" ] }, { "page": "clustering_tm", "title": "Redefined clustering coefficient for two-mode networks", "topics": [ "clustering_tm" ] }, { "page": "compart", "title": "Detects compartments", 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}, { "page": "distance_w", "title": "Distance in a weighted network", "topics": [ "distance_w" ] }, { "page": "elberling1999", "title": "No. of visits in a pollination web of arctic-alpine Sweden", "topics": [ "elberling1999" ] }, { "page": "empty", "title": "Deletes empty rows and columns from a matrix.", "topics": [ "empty" ] }, { "page": "endpoint", "title": "Computes end-point degrees for a bipartite network", "topics": [ "endpoint" ] }, { "page": "extinction", "title": "Simulates extinction of a species from a bipartite network", "topics": [ "extinction" ] }, { "page": "fc", "title": "Calculates the functional complementarity for the rows of a web", "topics": [ "fc", "fd" ] }, { "page": "frame2webs", "title": "Converts a table of observations into a network matrix", "topics": [ "edgelist2webs", "frame2webs" ] }, { "page": "genweb", "title": "Generate a random bipartite web", "topics": [ "genweb" ] }, { "page": "grouplevel", "title": "Analysis of bipartite webs at the level of each of the two levels (groups) of the network", "topics": [ "grouplevel", "one.grouplevel" ] }, { "page": "H2fun", "title": "Specialisation of a bipartite web.", "topics": [ "H2fun" ] }, { "page": "inouye1988", "title": "A pollination network from the Snowy Mountains of New South Wales, Australia", "topics": [ "inouye1988" ] }, { "page": "junker2013", "title": "Flower visitation network", "topics": [ "junker2013" ] }, { "page": "kato1990", "title": "No. of individuals caught in a pollination web of a Japanese beech forest", "topics": [ "kato1990" ] }, { "page": "kevan1970", "title": "A pollination network from Northern Ellesmere Island, Canada", "topics": [ "kevan1970" ] }, { "page": "linklevel", "title": "Indices of a bipartite network at the link level", "topics": [ "linklevel" ] }, { "page": "listModuleInformation", "title": "listModuleInformation", "topics": [ "listModuleInformation" ] }, { "page": "memmott1999", "title": "Flower visitation network from a meadow near Bristol, UK", 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to nestedness (z-score relative to null model)", "topics": [ "nestedcontribution" ] }, { "page": "nestedness", "title": "Calculates nestedness temperature of presence/absence matrices", "topics": [ "nestedness" ] }, { "page": "nestedrank", "title": "Calculates the rank of a species in a matrix sorted for maximum nestedness", "topics": [ "nestedrank" ] }, { "page": "networklevel", "title": "Analysis of bipartite webs at the level of the entire network", "topics": [ "networklevel" ] }, { "page": "nodespec", "title": "Calculates the node-based specialisation index", "topics": [ "nodespec" ] }, { "page": "NOS", "title": "Calculates the node overlap and separation according to Strona & Veech (2015)", "topics": [ "NOS" ] }, { "page": "npartite", "title": "Computes indices for a masked-one-mode network", "topics": [ "npartite" ] }, { "page": "null.distr", "title": "Null model based on fitted marginal distribution", "topics": [ "null.distr" ] }, { "page": "null.t.test", "title": "Compares 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