{
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  "Package": "tapnet",
  "Title": "Trait Matching and Abundance for Predicting Bipartite Networks",
  "Version": "0.6",
  "Authors@R": "c(person(\"Carsten\", \"Dormann\", email = \"carsten.dormann@biom.uni-freiburg.de\", role = c(\"aut\", \"cre\")), person(\"Gita\", \"Benadi\", email=\"gita.benadi@biom.uni-freiburg.de\", role=\"aut\"), person(\"Boris\", \"Tinoco\", email=\"btinoco@uazuay.edu.ec\", role=\"dtc\"), person(\"Ruth\", \"Stephan\", role=\"ctb\"), person(\"Jochen\", \"Fruend\", role=\"ctb\"))",
  "Description": "Functions to produce, fit and predict from bipartite\nnetworks with abundance, trait and phylogenetic information.\nIts methods are described in detail in Benadi, G., Dormann,\nC.F., Fruend, J., Stephan, R. & Vazquez, D.P. (2021)\nQuantitative prediction of interactions in bipartite networks\nbased on traits, abundances, and phylogeny. The American\nNaturalist, in press.",
  "License": "GPL",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "ByteCompile": "true",
  "URL": "https://github.com/biometry/tapnet",
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  "Packaged": {
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    "User": "root"
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  "Config/pak/sysreqs": "libglpk-dev libxml2-dev",
  "Repository": "https://biometry.r-universe.dev",
  "Date/Publication": "2026-01-20 13:58:40 UTC",
  "RemoteUrl": "https://github.com/biometry/tapnet",
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  "Author": "Carsten Dormann [aut, cre],\nGita Benadi [aut],\nBoris Tinoco [dtc],\nRuth Stephan [ctb],\nJochen Fruend [ctb]",
  "Maintainer": "Carsten Dormann <carsten.dormann@biom.uni-freiburg.de>",
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  "_type": "src",
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  "_created": "2026-07-03T05:58:36.000Z",
  "_published": "2026-07-03T10:58:50.178Z",
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    "author": "Carsten Dormann <carsten.dormann@biom.uni-freiburg.de>",
    "committer": "Carsten Dormann <carsten.dormann@biom.uni-freiburg.de>",
    "message": "removed fit_tapnetDE from package; version 0.6 uploaded to CRAN\n",
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  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
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    "name": "Biometry and Environmental System Analysis, University of Freiburg",
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    "description": "Repository of the Department of Biometry and Environmental System Analysis "
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      "date": "2021-01-28"
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    "gof_tapnet",
    "make_tapnet",
    "predict_tapnet",
    "simnetfromtap",
    "simulate_tapnet",
    "tapnet2df"
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      "title": "Hummingbird-flower networks",
      "object": "Tinoco",
      "class": [
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      "table": false,
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      "object": "Tinoco",
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        "array"
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      "table": true,
      "tojson": true
    },
    {
      "name": "humm_tree",
      "title": "Hummingbird-flower networks",
      "object": "Tinoco",
      "class": [
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      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
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      "title": "Hummingbird-flower networks",
      "object": "Tinoco",
      "class": [
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      "table": false,
      "tojson": true
    },
    {
      "name": "plant_abun",
      "title": "Hummingbird-flower networks",
      "object": "Tinoco",
      "class": [
        "list"
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      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "plant_traits",
      "title": "Hummingbird-flower networks",
      "object": "Tinoco",
      "class": [
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        "array"
      ],
      "fields": [
        "Corolla_length_mm"
      ],
      "rows": 32,
      "table": true,
      "tojson": true
    },
    {
      "name": "plant_tree",
      "title": "Hummingbird-flower networks",
      "object": "Tinoco",
      "class": [
        "phylo",
        "phylomatic"
      ],
      "fields": [],
      "table": false,
      "tojson": false
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  "_help": [
    {
      "page": "fit_tapnet",
      "title": "Fit the tapnet model to a network",
      "topics": [
        "fit_tapnet"
      ]
    },
    {
      "page": "fit_tapnetDE",
      "title": "Fit the tapnet model to a network",
      "topics": [
        "fit_tapnetDE"
      ]
    },
    {
      "page": "gof_tapnet",
      "title": "Goodness-of-fit of a tapnet fit",
      "topics": [
        "gof_tapnet"
      ]
    },
    {
      "page": "internalFunctions",
      "title": "Helper functions for tapnet",
      "topics": [
        "bjornloglik",
        "fit_abund",
        "functions",
        "helper",
        "internalFunctions",
        "latent_cor",
        "loglik_tapnet",
        "param_vec2list",
        "pems_from_tree",
        "refit_params",
        "select_relevant_pems",
        "tmatch",
        "web_indices"
      ]
    },
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      "title": "Constructs an object of type \"tapnet\"",
      "topics": [
        "make_tapnet"
      ]
    },
    {
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      "title": "Predict from fitted tapnet to new data",
      "topics": [
        "predict_tapnet"
      ]
    },
    {
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      "title": "Simulates a network from parameters, abundances, traits and phylogeny provided",
      "topics": [
        "simnetfromtap"
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      "topics": [
        "simulate_tapnet"
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      "title": "Convert tapnet object into data.frame",
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      "title": "Hummingbird-flower networks",
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        "humm_traits",
        "humm_tree",
        "networks",
        "plant_abun",
        "plant_traits",
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        "Tinoco"
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